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dc.contributor.authorMartínez Portela, Paulino
dc.contributor.authorRobledo Sánchez, Diego
dc.contributor.authorTaboada Penoucos, Xoana
dc.contributor.authorBlanco Hortas, Andrés
dc.contributor.authorMoser, Michel
dc.contributor.authorMaroso, Francesco
dc.contributor.authorHermida Prieto, Miguel
dc.contributor.authorGómez Tato, Antonio
dc.contributor.authorÁlvarez Blázquez, Blanca
dc.contributor.authorCabaleiro, Santiago
dc.contributor.authorPiferrer, Francesc
dc.contributor.authorBouza Fernández, María Carmen
dc.contributor.authorLien, Sigbjørn
dc.contributor.authorViñas Díaz, Ana María
dc.date.accessioned2021-04-23T11:00:15Z
dc.date.available2021-04-23T11:00:15Z
dc.date.issued2021
dc.identifier.citationGenomics 113 (2021) 1705–1718
dc.identifier.issn0888-7543
dc.identifier.urihttp://hdl.handle.net/10347/26042
dc.description.abstractBackground: Understanding sex determination (SD) across taxa is a major challenge for evolutionary biology. The new genomic tools are paving the way to identify genomic features underlying SD in fish, a group frequently showing limited sex chromosome differentiation and high SD evolutionary turnover. Turbot (Scophthalmus maximus) is a commercially important flatfish with an undifferentiated ZW/ZZ SD system and remarkable sexual dimorphism. Here we describe a new long-read turbot genome assembly used to disentangle the genetic architecture of turbot SD by combining genomics and classical genetics approaches. Results: The new turbot genome assembly consists of 145 contigs (N50 = 22.9 Mb), 27 of them representing >95% of its estimated genome size. A genome wide association study (GWAS) identified a ~ 6.8 Mb region on chromosome 12 associated with sex in 69.4% of the 36 families analyzed. The highest associated markers flanked sox2, the only gene in the region showing differential expression between sexes before gonad differentiation. A single SNP showed consistent differences between Z and W chromosomes. The analysis of a broad sample of families suggested the presence of additional genetic and/or environmental factors on turbot SD. Conclusions: The new chromosome-level turbot genome assembly, one of the most contiguous fish assemblies to date, facilitated the identification of sox2 as a consistent candidate gene putatively driving SD in this species. This chromosome SD system barely showed any signs of differentiation, and other factors beyond the main QTL seem to control SD in a certain proportion of families
dc.description.sponsorshipThis work was supported by the Spanish Ministry of Economy and Competitiveness, Grant: AGL2014-57065-R, by the European Union's Horizon 2020 Research and Innovation Programme under grant agreement No 81792 (AQUA-FAANG) and by Consellería de Educación, Universidade e Formación Profesional. Xunta de Galicia, Grant number:ED431C 2018/28
dc.language.isoeng
dc.publisherElsevier
dc.relationinfo:eu-repo/grantAgreement/EC/H2020/81792
dc.relationinfo:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/AGL2014-57065-R/ES/IDENTIFICACION DEL GEN MAESTRO DETERMINANTE DEL SEXO EN RODABALLO: APLICACIONES INDUSTRIALES PARA LA OBTENCION DE POBLACIONES TODO HEMBRA
dc.rights© 2021 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/)
dc.rightsAttribution-NonCommercial-NoDerivatives 4.0 Internacional
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/4.0/
dc.subjectTurbot
dc.subjectSex determination
dc.subjectGWAS
dc.subjectsox2
dc.subjectInterfamily variation
dc.subjectGenome assembly
dc.subjectOxford Nanopore
dc.titleA genome-wide association study, supported by a new chromosome-level genome assembly, suggests sox2 as a main driver of the undifferentiatiated ZZ/ZW sex determination of turbot (Scophthalmus maximus)
dc.typeinfo:eu-repo/semantics/article
dc.identifier.DOI10.1016/j.ygeno.2021.04.007
dc.relation.publisherversionhttps://doi.org/10.1016/j.ygeno.2021.04.007
dc.type.versioninfo:eu-repo/semantics/publishedVersion
dc.rights.accessrightsinfo:eu-repo/semantics/openAccess
dc.contributor.affiliationUniversidade de Santiago de Compostela. Departamento de Zooloxía, Xenética e Antropoloxía Física
dc.description.peerreviewedSI


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© 2021 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/)
Except where otherwise noted, this item's license is described as  © 2021 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/)





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